Summary Statistics

Species Information

##                                                Species Mammal.Bird
## 1                                               agouti      Mammal
## 2                             brown four-eyed oppossum      Mammal
## 3                                   crab eating racoon      Mammal
## 4                                                coati      Mammal
## 5                                     collared peccary      Mammal
## 6                                      Greater Tinamou        Bird
## 7                                             kinkajou      Mammal
## 8                                              opossum      Mammal
## 9                                                 paca      Mammal
## 10                                    red brocket deer      Mammal
## 11 rufous fronted wood-quail (Odontophorus erythrops)         Bird
## 12                                         rodent spp.      Mammal
## 13                                     rufous tree rat      Mammal
## 14                                       squirrel spp.      Mammal
## 15                                     Tomes spiny rat      Mammal
## 16                                           Wood-rail        Bird
##    Disperser. Func.group   Animals. sightings ingestions removals nibbles
## 1           y         TD       ago        260          0       44      70
## 2           y         TD       bfo         82          2        2       4
## 3           y         TD       cer          1          0        0       0
## 4           y         TD       coa        458          2        0     175
## 5           y         TD      cpec        136          4        0       0
## 6           y         TD      gtin          8          0        0       0
## 7           y         TD      kink         84          0        3      14
## 8           y         TD      opos        100          1        0      27
## 9           y         TD      paca        416          0       31      73
## 10          y         TD       rbd          5          0        0       0
## 11          y         TD       rfw        434          0        0       4
## 12          y         TD       rod       1380          0      197      45
## 13          y         TD       rtr          5          0        0       1
## 14          y         TD       squ        675          0      249     109
## 15          y         TD       tsr        136          0       24       1
## 16          y         TD wood-rail        127          0        0       7
##    detections
## 1          15
## 2          12
## 3           1
## 4          11
## 5           7
## 6           2
## 7           9
## 8           8
## 9          10
## 10          1
## 11         15
## 12         21
## 13          1
## 14         20
## 15          6
## 16         10

Visualization of ht vs focal 50

Histograms of 50m bands

##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##    0.00    4.00   19.50   34.28   41.00  237.00
## [1] 1962.388
## Best Normalizing transformation with 162 Observations
##  Estimated Normality Statistics (Pearson P / df, lower => more normal):
##  - No transform: 3.4629 
##  - Log_b(x+a): 3.6176 
##  - sqrt(x+a): 1.2309 
##  - exp(x): 5.7714 
##  - arcsinh(x): 1.4514 
##  - Yeo-Johnson: 1.0713 
##  - orderNorm: 1.208 
## Estimation method: Out-of-sample via CV with 10 folds and 5 repeats
##  
## Based off these, bestNormalize chose:
## Standardized Yeo-Johnson Transformation with 162 nonmissing obs.:
##  Estimated statistics:
##  - lambda = 0.1337981 
##  - mean (before standardization) = 3.458438 
##  - sd (before standardization) = 2.135431

Scatter plots using 50m

Scatter of Disperser visitation at 50m fruiting neighborhood

Scatter of Disperser visitation at 50m fruiting neighborhood at high cameras

Scatter of Dispersal at low cameras

Correlation at each band

effect of height focal against visitation

## $vis.rate

## 
## $FD.rate

## 
## $TD.rate

PCA of all environmental variables

PCA of selected environmental variables

Models 50 m band

## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## real.visitation ~ focalmonth..50 * Height + (1 + focalmonth..50 |  
##     Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   3854.7   3876.3  -1920.4   3840.7      154 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -9.4056 -2.5120 -0.4039  1.4000 25.8977 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    2.047    1.431         
##         focalmonth..50 1.466    1.211    -0.57
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               2.10935    0.22237   9.486  < 2e-16 ***
## focalmonth..50            0.49940    0.30408   1.642    0.101    
## Heightlow                 0.93455    0.04358  21.445  < 2e-16 ***
## focalmonth..50:Heightlow -0.31323    0.03818  -8.204 2.32e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.424              
## Heightlow   -0.155  0.068       
## fclmn..50:H  0.096 -0.098 -0.633
##      chisq      ratio        rdf          p 
## 2959.73756   19.21908  154.00000    0.00000
## df.resid 
## 19.21908
## 
## PARAMETRIC BOOTSTRAP
## 
## 
## Call:
## bootMer(x = model.9, FUN = FUN, nsim = 100)
## 
## 
## Bootstrap Statistics :
##     original    bias    std. error
## t1* 2959.738 -2858.498    14.45909
##              2.5%    97.5% 
## 29.83737 22.53453 39.87581
## df.resid 
## 19.21908
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: real.visitation ~ focalmonth..50 * Height + (1 | obs_effect) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1454.4   1479.1   -719.2   1438.4      153 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.17365 -0.18972  0.02925  0.07302  0.26186 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    1.97138  1.4041        
##  Tree       (Intercept)    0.60808  0.7798        
##             focalmonth..50 0.03535  0.1880   -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)                1.7366     0.2751   6.313 2.74e-10 ***
## focalmonth..50             0.1999     0.2001   0.999    0.318    
## Heightlow                  1.3203     0.2942   4.488 7.20e-06 ***
## focalmonth..50:Heightlow  -0.2569     0.2435  -1.055    0.291    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.537              
## Heightlow   -0.715  0.423       
## fclmn..50:H  0.361 -0.767 -0.531
## convergence code: 0
## boundary (singular) fit: see ?isSingular
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: real.visitation ~ focalmonth..50 * Height + offset(lograte) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   3794.0   3815.6  -1890.0   3780.0      154 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -8.5540 -2.5265 -0.5044  1.5826 30.3127 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    2.055    1.433         
##         focalmonth..50 1.286    1.134    -0.59
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -0.33897    0.22232  -1.525   0.1273    
## focalmonth..50            0.51673    0.28594   1.807   0.0707 .  
## Heightlow                 0.85862    0.04317  19.889  < 2e-16 ***
## focalmonth..50:Heightlow -0.27907    0.03740  -7.462  8.5e-14 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.435              
## Heightlow   -0.154  0.070       
## fclmn..50:H  0.094 -0.101 -0.625
##      chisq      ratio        rdf          p 
## 3111.07009   20.20175  154.00000    0.00000
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## real.visitation ~ focalmonth..50 + offset(lograte) + (1 | obs_effect) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1469.5   1488.0   -728.8   1457.5      155 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.18093 -0.18346  0.01850  0.06333  0.17155 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    2.27529  1.5084        
##  Tree       (Intercept)    0.59520  0.7715        
##             focalmonth..50 0.05837  0.2416   -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                Estimate Std. Error z value Pr(>|z|)
## (Intercept)    0.128395   0.198866   0.646    0.519
## focalmonth..50 0.004476   0.135904   0.033    0.974
## 
## Correlation of Fixed Effects:
##             (Intr)
## fclmnth..50 -0.587
## convergence code: 0
## boundary (singular) fit: see ?isSingular
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)                -0.339      0.999   -0.34    0.734    
## focalmonth..50              0.517      1.285    0.40    0.688    
## Heightlow                   0.859      0.194    4.43  9.6e-06 ***
## focalmonth..50:Heightlow   -0.279      0.168   -1.66    0.097 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: real.visitation ~ focalmonth..50 * Height + offset(lograte) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   3794.0   3815.6  -1890.0   3780.0      154 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -8.5540 -2.5265 -0.5044  1.5826 30.3127 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    2.055    1.433         
##         focalmonth..50 1.286    1.134    -0.59
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -0.33897    0.22232  -1.525   0.1273    
## focalmonth..50            0.51673    0.28594   1.807   0.0707 .  
## Heightlow                 0.85862    0.04317  19.889  < 2e-16 ***
## focalmonth..50:Heightlow -0.27907    0.03740  -7.462  8.5e-14 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.435              
## Heightlow   -0.154  0.070       
## fclmn..50:H  0.094 -0.101 -0.625
##      chisq      ratio        rdf          p 
## 3111.07009   20.20175  154.00000    0.00000
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: real.visitation ~ focalmonth..50 * Height + offset(lograte) +  
##     (1 | obs_effect) + (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1454.6   1479.2   -719.3   1438.6      153 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.16823 -0.19820  0.02129  0.07651  0.31996 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    1.93269  1.3902        
##  Tree       (Intercept)    0.71153  0.8435        
##             focalmonth..50 0.05528  0.2351   -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -0.6735     0.2793  -2.411   0.0159 *  
## focalmonth..50             0.1535     0.2008   0.765   0.4445    
## Heightlow                  1.2254     0.2929   4.183 2.87e-05 ***
## focalmonth..50:Heightlow  -0.2117     0.2415  -0.876   0.3808    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.549              
## Heightlow   -0.705  0.422       
## fclmn..50:H  0.360 -0.768 -0.533
## convergence code: 0
## boundary (singular) fit: see ?isSingular
## [1] FALSE
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)                -0.339      0.999   -0.34    0.734    
## focalmonth..50              0.517      1.285    0.40    0.688    
## Heightlow                   0.859      0.194    4.43  9.6e-06 ***
## focalmonth..50:Heightlow   -0.279      0.168   -1.66    0.097 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## real.visitation ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   3796.5   3824.2  -1889.2   3778.5      152 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -8.5525 -2.5302 -0.4724  1.5840 30.3134 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    1.994    1.412         
##         focalmonth..50 1.274    1.129    -0.59
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -0.29970    0.22185  -1.351   0.1767    
## focalmonth..50            0.54920    0.28470   1.929   0.0537 .  
## Heightlow                 0.85941    0.04317  19.906  < 2e-16 ***
## PC1                      -0.60178    0.52215  -1.153   0.2491    
## PC2                       0.17118    0.55214   0.310   0.7565    
## focalmonth..50:Heightlow -0.27945    0.03740  -7.472 7.87e-14 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.420                            
## Heightlow   -0.152  0.071                     
## PC1         -0.085 -0.087 -0.011              
## PC2          0.111  0.006  0.005  0.149       
## fclmn..50:H  0.093 -0.102 -0.625  0.005 -0.004
##      chisq      ratio        rdf          p 
## 3110.79632   20.46577  152.00000    0.00000
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## real.visitation ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 | obs_effect) + (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1454.8   1485.7   -717.4   1434.8      151 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.14622 -0.17623  0.01037  0.07654  0.30887 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    1.96058  1.4002        
##  Tree       (Intercept)    0.51627  0.7185        
##             focalmonth..50 0.05093  0.2257   -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -0.70493    0.27021  -2.609  0.00909 ** 
## focalmonth..50            0.19819    0.21010   0.943  0.34551    
## Heightlow                 1.26906    0.29437   4.311 1.62e-05 ***
## PC1                      -0.81832    0.40337  -2.029  0.04249 *  
## PC2                      -0.05268    0.41998  -0.125  0.90019    
## focalmonth..50:Heightlow -0.21157    0.24402  -0.867  0.38593    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.552                            
## Heightlow   -0.727  0.429                     
## PC1          0.097 -0.127 -0.096              
## PC2         -0.069  0.199  0.078  0.060       
## fclmn..50:H  0.380 -0.767 -0.535  0.009 -0.102
## convergence code: 0
## Model failed to converge with max|grad| = 0.00378545 (tol = 0.001, component 1)

Models using functional groups

## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## TD ~ focalmonth..50 * Height + offset(lograte) + (1 + focalmonth..50 |  
##     Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   2472.5   2494.0  -1229.2   2458.5      154 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -6.9756 -1.9011 -0.5447  0.9866 15.3002 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    2.188    1.479         
##         focalmonth..50 1.378    1.174    -0.58
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -2.22943    0.24407  -9.134   <2e-16 ***
## focalmonth..50            0.51793    0.30635   1.691   0.0909 .  
## Heightlow                 2.78539    0.09157  30.417   <2e-16 ***
## focalmonth..50:Heightlow -0.55727    0.05722  -9.739   <2e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.430              
## Heightlow   -0.335  0.118       
## fclmn..50:H  0.225 -0.170 -0.674
##         chisq         ratio           rdf             p 
##  1.875957e+03  1.218154e+01  1.540000e+02 1.945129e-293
## boundary (singular) fit: see ?isSingular
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## TD ~ focalmonth..50 * Height + offset(lograte) + (1 | obs_effect) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1212.7   1237.3   -598.3   1196.7      153 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.13110 -0.48719 -0.01168  0.05818  0.50225 
## 
## Random effects:
##  Groups     Name           Variance  Std.Dev. Corr 
##  obs_effect (Intercept)    2.2421084 1.49737       
##  Tree       (Intercept)    0.2955314 0.54363       
##             focalmonth..50 0.0002012 0.01418  -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -3.0786     0.3369  -9.139   <2e-16 ***
## focalmonth..50             0.4197     0.2493   1.684   0.0922 .  
## Heightlow                  3.5915     0.3652   9.834   <2e-16 ***
## focalmonth..50:Heightlow  -0.4993     0.2814  -1.774   0.0760 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.490              
## Heightlow   -0.829  0.431       
## fclmn..50:H  0.415 -0.787 -0.533
## convergence code: 0
## boundary (singular) fit: see ?isSingular
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: TD ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   2475.6   2503.4  -1228.8   2457.6      152 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -6.9740 -1.9018 -0.5431  0.9820 15.3044 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    2.128    1.459         
##         focalmonth..50 1.387    1.178    -0.58
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)              -2.21188    0.24443  -9.049   <2e-16 ***
## focalmonth..50            0.54814    0.31057   1.765   0.0776 .  
## Heightlow                 2.78624    0.09158  30.423   <2e-16 ***
## PC1                      -0.50126    0.54527  -0.919   0.3580    
## PC2                      -0.07591    0.58422  -0.130   0.8966    
## focalmonth..50:Heightlow -0.55755    0.05722  -9.744   <2e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.410                            
## Heightlow   -0.334  0.117                     
## PC1         -0.063 -0.099 -0.008              
## PC2          0.130 -0.007  0.002  0.166       
## fclmn..50:H  0.224 -0.168 -0.674  0.004 -0.002
##         chisq         ratio           rdf             p 
##  1.876307e+03  1.234413e+01  1.520000e+02 1.339943e-294
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: TD ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 | obs_effect) + (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1215.8   1246.6   -597.9   1195.8      151 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -1.13460 -0.47661 -0.01578  0.05759  0.54638 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    2.244951 1.49832       
##  Tree       (Intercept)    0.295418 0.54352       
##             focalmonth..50 0.004569 0.06759  -1.00
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -3.0918     0.3389  -9.123   <2e-16 ***
## focalmonth..50             0.4388     0.2457   1.786   0.0741 .  
## Heightlow                  3.6066     0.3672   9.821   <2e-16 ***
## PC1                       -0.3621     0.4243  -0.853   0.3935    
## PC2                       -0.1752     0.4226  -0.415   0.6784    
## focalmonth..50:Heightlow  -0.4951     0.2792  -1.773   0.0762 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.517                            
## Heightlow   -0.831  0.455                     
## PC1          0.105 -0.147 -0.099              
## PC2         -0.052  0.148  0.055  0.040       
## fclmn..50:H  0.419 -0.790 -0.536  0.015 -0.074
## convergence code: 0
## Model failed to converge with max|grad| = 0.0201813 (tol = 0.001, component 1)
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## FD ~ focalmonth..50 * Height + offset(lograte) + (1 + focalmonth..50 |  
##     Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1418.5   1440.0   -702.2   1404.5      154 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -7.7849 -0.9043 -0.3278 -0.0660 17.7018 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    4.116    2.029         
##         focalmonth..50 3.261    1.806    -0.57
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -1.4797     0.4284  -3.454 0.000552 ***
## focalmonth..50             0.9519     0.5925   1.607 0.108160    
## Heightlow                 -2.4997     0.1449 -17.253  < 2e-16 ***
## focalmonth..50:Heightlow  -1.4009     0.3249  -4.311 1.62e-05 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.457              
## Heightlow   -0.152  0.091       
## fclmn..50:H  0.057 -0.216 -0.356
##         chisq         ratio           rdf             p 
##  1.221939e+03  7.934669e+00  1.540000e+02 1.509856e-165
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: 
## FD ~ focalmonth..50 * Height + offset(lograte) + (1 | obs_effect) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##    616.3    640.9   -300.1    600.3      153 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -0.74665 -0.24478 -0.13522  0.03046  1.25134 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    4.224    2.055         
##  Tree       (Intercept)    2.543    1.595         
##             focalmonth..50 2.750    1.658    -0.62
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -1.6706     0.5090  -3.282  0.00103 ** 
## focalmonth..50             0.9038     0.7170   1.260  0.20751    
## Heightlow                 -3.5565     0.6225  -5.714 1.11e-08 ***
## focalmonth..50:Heightlow  -1.7915     0.9480  -1.890  0.05880 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw
## fclmnth..50 -0.490              
## Heightlow   -0.445  0.309       
## fclmn..50:H  0.286 -0.624 -0.472
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: FD ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##   1416.4   1444.1   -699.2   1398.4      152 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -7.7897 -0.9224 -0.3045 -0.0663 17.6837 
## 
## Random effects:
##  Groups Name           Variance Std.Dev. Corr 
##  Tree   (Intercept)    3.741    1.934         
##         focalmonth..50 2.633    1.623    -0.49
## Number of obs: 161, groups:  Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -1.4788     0.4146  -3.567 0.000361 ***
## focalmonth..50             1.1028     0.5845   1.887 0.059190 .  
## Heightlow                 -2.4796     0.1437 -17.260  < 2e-16 ***
## PC1                       -1.8091     0.8246  -2.194 0.028250 *  
## PC2                        0.7492     0.9920   0.755 0.450096    
## focalmonth..50:Heightlow  -1.3933     0.3195  -4.361 1.29e-05 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.449                            
## Heightlow   -0.137  0.083                     
## PC1          0.199 -0.210 -0.043              
## PC2         -0.014 -0.069  0.028  0.069       
## fclmn..50:H  0.051 -0.208 -0.354  0.008  0.044
## convergence code: 0
## Model failed to converge with max|grad| = 0.116505 (tol = 0.001, component 1)
##         chisq         ratio           rdf             p 
##  1.207626e+03  7.944906e+00  1.520000e+02 9.953175e-164
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: FD ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 | obs_effect) + (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##    617.8    648.6   -298.9    597.8      151 
## 
## Scaled residuals: 
##      Min       1Q   Median       3Q      Max 
## -0.75059 -0.24345 -0.13438  0.02927  1.12468 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    4.036    2.009         
##  Tree       (Intercept)    2.481    1.575         
##             focalmonth..50 2.641    1.625    -0.55
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -1.7796     0.5074  -3.507 0.000453 ***
## focalmonth..50             1.0650     0.7256   1.468 0.142195    
## Heightlow                 -3.4061     0.6159  -5.530 3.19e-08 ***
## PC1                       -1.1574     0.8326  -1.390 0.164501    
## PC2                        0.6826     0.9919   0.688 0.491383    
## focalmonth..50:Heightlow  -1.8434     0.9596  -1.921 0.054728 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.482                            
## Heightlow   -0.448  0.308                     
## PC1          0.152 -0.097 -0.044              
## PC2         -0.106  0.121  0.073  0.011       
## fclmn..50:H  0.275 -0.614 -0.475 -0.043 -0.100
## convergence code: 0
## Model failed to converge with max|grad| = 0.180158 (tol = 0.001, component 1)
## bobyqa : [OK]
## Nelder_Mead : [OK]
## nlminbwrap : [OK]
## nmkbw : [OK]
## optimx.L-BFGS-B : [OK]
## nloptwrap.NLOPT_LN_NELDERMEAD : [OK]
## nloptwrap.NLOPT_LN_BOBYQA : [OK]
##                        bobyqa                   Nelder_Mead 
##                          TRUE                          TRUE 
##                    nlminbwrap                         nmkbw 
##                          TRUE                          TRUE 
##               optimx.L-BFGS-B nloptwrap.NLOPT_LN_NELDERMEAD 
##                         FALSE                          TRUE 
##     nloptwrap.NLOPT_LN_BOBYQA 
##                          TRUE
## Generalized linear mixed model fit by maximum likelihood (Laplace
##   Approximation) [glmerMod]
##  Family: poisson  ( log )
## Formula: FD ~ focalmonth..50 * Height + PC1 + PC2 + offset(lograte) +  
##     (1 | obs_effect) + (1 + focalmonth..50 | Tree)
##    Data: cam_data_NFM1tree
## 
##      AIC      BIC   logLik deviance df.resid 
##    617.7    648.5   -298.9    597.7      151 
## 
## Scaled residuals: 
##     Min      1Q  Median      3Q     Max 
## -0.7394 -0.2434 -0.1376  0.0277  1.0980 
## 
## Random effects:
##  Groups     Name           Variance Std.Dev. Corr 
##  obs_effect (Intercept)    4.113    2.028         
##  Tree       (Intercept)    2.224    1.491         
##             focalmonth..50 2.343    1.531    -0.50
## Number of obs: 161, groups:  obs_effect, 161; Tree, 49
## 
## Fixed effects:
##                          Estimate Std. Error z value Pr(>|z|)    
## (Intercept)               -1.7793     0.4997  -3.561  0.00037 ***
## focalmonth..50             1.0424     0.7219   1.444  0.14873    
## Heightlow                 -3.3946     0.6151  -5.519 3.42e-08 ***
## PC1                       -1.1523     0.8079  -1.426  0.15379    
## PC2                        0.6750     0.9730   0.694  0.48786    
## focalmonth..50:Heightlow  -1.8380     0.9594  -1.916  0.05539 .  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Correlation of Fixed Effects:
##             (Intr) fc..50 Hghtlw PC1    PC2   
## fclmnth..50 -0.468                            
## Heightlow   -0.455  0.314                     
## PC1          0.154 -0.097 -0.050              
## PC2         -0.112  0.125  0.077  0.008       
## fclmn..50:H  0.276 -0.623 -0.475 -0.033 -0.104
## convergence code: 0
## Model failed to converge with max|grad| = 0.0180262 (tol = 0.001, component 1)

Variance explained